Version 1.4.0

2 files changed, 79 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..85a95dccbc9e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,27 @@
+pkgbase = r-ccimpute
+	pkgdesc = ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data (https://doi.org/10.1186/s12859-022-04814-8)
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/ccImpute
+	arch = x86_64
+	license = GPL3
+	checkdepends = r-testthat
+	makedepends = r-rcppeigen
+	depends = r-biocparallel
+	depends = r-matrixstats
+	depends = r-rcpp
+	depends = r-simlr
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-mclust
+	optdepends = r-rmarkdown
+	optdepends = r-scater
+	optdepends = r-scrnaseq
+	optdepends = r-sessioninfo
+	optdepends = r-singlecellexperiment
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ccImpute_1.4.0.tar.gz
+	md5sums = f402177e3fc7bbbcac504c956889dfa9
+	sha256sums = 12728b12c2f470112c7a3108a6f999d798d67e07f892c75f08571c6462f2476c
+
+pkgname = r-ccimpute
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..3b76b50d3227
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=ccImpute
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data (https://doi.org/10.1186/s12859-022-04814-8)"
+arch=(x86_64)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-biocparallel
+  r-matrixstats
+  r-rcpp
+  r-simlr
+)
+makedepends=(
+  r-rcppeigen
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-mclust
+  r-rmarkdown
+  r-scater
+  r-scrnaseq
+  r-sessioninfo
+  r-singlecellexperiment
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('f402177e3fc7bbbcac504c956889dfa9')
+sha256sums=('12728b12c2f470112c7a3108a6f999d798d67e07f892c75f08571c6462f2476c')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}