Version 1.0.2

2 files changed, 81 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..c7f9a7c19ab6
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,29 @@
+pkgbase = r-cdi
+	pkgdesc = Clustering Deviation Index (CDI)
+	pkgver = 1.0.2
+	pkgrel = 1
+	url = https://bioconductor.org/packages/CDI
+	arch = any
+	license = GPL-3.0-only
+	checkdepends = r-biocgenerics
+	checkdepends = r-runit
+	depends = r-biocparallel
+	depends = r-ggplot2
+	depends = r-ggsci
+	depends = r-matrixstats
+	depends = r-reshape2
+	depends = r-seurat
+	depends = r-seuratobject
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	optdepends = r-biocgenerics
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-magick
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/CDI_1.0.2.tar.gz
+	md5sums = 64ebd520b0ba4613c3bddf06bb82dbc0
+	b2sums = 05d254046c79717e813bf0c755add98e54613c342f054a6561e41c92215424204994206e69080e61d734b26d92a095bc163e8a77f82278e0a37bbfbac42a0d54
+
+pkgname = r-cdi
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4bec9b9c94f0
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=CDI
+_pkgver=1.0.2
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Clustering Deviation Index (CDI)"
+arch=(any)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('GPL-3.0-only')
+depends=(
+  r-biocparallel
+  r-ggplot2
+  r-ggsci
+  r-matrixstats
+  r-reshape2
+  r-seurat
+  r-seuratobject
+  r-singlecellexperiment
+  r-summarizedexperiment
+)
+checkdepends=(
+  r-biocgenerics
+  r-runit
+)
+optdepends=(
+  r-biocgenerics
+  r-biocstyle
+  r-knitr
+  r-magick
+  r-rmarkdown
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('64ebd520b0ba4613c3bddf06bb82dbc0')
+b2sums=('05d254046c79717e813bf0c755add98e54613c342f054a6561e41c92215424204994206e69080e61d734b26d92a095bc163e8a77f82278e0a37bbfbac42a0d54')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}