add r-cellid

2 files changed, 96 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f1b55a42cdf0
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,40 @@
+pkgbase = r-cellid
+	pkgdesc = Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence Analysis
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/CelliD
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocparallel
+	depends = r-data.table
+	depends = r-fastmatch
+	depends = r-fgsea
+	depends = r-ggplot2
+	depends = r-glue
+	depends = r-irlba
+	depends = r-matrixstats
+	depends = r-pbapply
+	depends = r-rcpp
+	depends = r-rcpparmadillo
+	depends = r-reticulate
+	depends = r-rtsne
+	depends = r-scater
+	depends = r-seurat
+	depends = r-singlecellexperiment
+	depends = r-stringr
+	depends = r-summarizedexperiment
+	depends = r-tictoc
+	depends = r-umap
+	optdepends = r-biocstyle
+	optdepends = r-destiny
+	optdepends = r-ggpubr
+	optdepends = r-ggrepel
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-tidyverse
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/CelliD_1.4.0.tar.gz
+	sha256sums = 3800f8ff9c690e03509b9962415cdd2a5af46c46e6f7ce9408b3d39aaa632719
+
+pkgname = r-cellid
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..922b7f490afe
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,56 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=CelliD
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=1.4.0
+pkgrel=1
+pkgdesc='Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence Analysis'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocparallel
+  r-data.table
+  r-fastmatch
+  r-fgsea
+  r-ggplot2
+  r-glue
+  r-irlba
+  r-matrixstats
+  r-pbapply
+  r-rcpp
+  r-rcpparmadillo
+  r-reticulate
+  r-rtsne
+  r-scater
+  r-seurat
+  r-singlecellexperiment
+  r-stringr
+  r-summarizedexperiment
+  r-tictoc
+  r-umap
+)
+optdepends=(
+  r-biocstyle
+  r-destiny
+  r-ggpubr
+  r-ggrepel
+  r-knitr
+  r-rmarkdown
+  r-testthat
+  r-tidyverse
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('3800f8ff9c690e03509b9962415cdd2a5af46c46e6f7ce9408b3d39aaa632719')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: