add r-cellity

2 files changed, 66 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..610b7b2a1135
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,25 @@
+pkgbase = r-cellity
+	pkgdesc = Quality Control for Single-Cell RNA-seq Data
+	pkgver = 1.24.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/cellity
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-annotationdbi
+	depends = r-e1071
+	depends = r-ggplot2
+	depends = r-mvoutlier
+	depends = r-org.hs.eg.db
+	depends = r-org.mm.eg.db
+	depends = r-robustbase
+	depends = r-topgo
+	optdepends = r-biocstyle
+	optdepends = r-caret
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/cellity_1.24.0.tar.gz
+	sha256sums = 9e6a8d6a51db1ca55ca2f1282b5d6e3d177007e700dfedd367d054235d868f7b
+
+pkgname = r-cellity
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..ddeeb60f4b75
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,41 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=cellity
+_pkgver=1.24.0
+pkgname=r-${_pkgname,,}
+pkgver=1.24.0
+pkgrel=1
+pkgdesc='Quality Control for Single-Cell RNA-seq Data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-e1071
+  r-ggplot2
+  r-mvoutlier
+  r-org.hs.eg.db
+  r-org.mm.eg.db
+  r-robustbase
+  r-topgo
+)
+optdepends=(
+  r-biocstyle
+  r-caret
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('9e6a8d6a51db1ca55ca2f1282b5d6e3d177007e700dfedd367d054235d868f7b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: