add r-censcyt

2 files changed, 87 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..91d102667ee0
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,35 @@
+pkgbase = r-censcyt
+	pkgdesc = Differential abundance analysis with a right censored covariate in high-dimensional cytometry
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/censcyt
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-biocparallel
+	depends = r-broom.mixed
+	depends = r-diffcyt
+	depends = r-dirmult
+	depends = r-dplyr
+	depends = r-edger
+	depends = r-fitdistrplus
+	depends = r-lme4
+	depends = r-magrittr
+	depends = r-mice
+	depends = r-multcomp
+	depends = r-purrr
+	depends = r-rlang
+	depends = r-s4vectors
+	depends = r-stringr
+	depends = r-summarizedexperiment
+	depends = r-tibble
+	depends = r-tidyr
+	optdepends = r-biocstyle
+	optdepends = r-ggplot2
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/censcyt_1.4.0.tar.gz
+	sha256sums = a4a7df868f03d1573c8c9725e5d0a092e15adcedc0b4340628c2ac91101d990d
+
+pkgname = r-censcyt
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..b9f28b43b04e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=censcyt
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=1.4.0
+pkgrel=1
+pkgdesc='Differential abundance analysis with a right censored covariate in high-dimensional cytometry'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-biocparallel
+  r-broom.mixed
+  r-diffcyt
+  r-dirmult
+  r-dplyr
+  r-edger
+  r-fitdistrplus
+  r-lme4
+  r-magrittr
+  r-mice
+  r-multcomp
+  r-purrr
+  r-rlang
+  r-s4vectors
+  r-stringr
+  r-summarizedexperiment
+  r-tibble
+  r-tidyr
+)
+optdepends=(
+  r-biocstyle
+  r-ggplot2
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a4a7df868f03d1573c8c9725e5d0a092e15adcedc0b4340628c2ac91101d990d')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: