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authorBioArchLinuxBot2022-11-07 06:11:10 +0000
committerBioArchLinuxBot2022-11-07 06:11:10 +0000
commit050ef2f6fb2151723234ca44a3ac38d4542e8dfd (patch)
tree34ecc7aece495d4d96975e53958baff3874b8770
parent3972405549bb956331e1facfbaf5c836ec1e0c23 (diff)
downloadaur-050ef2f6fb2151723234ca44a3ac38d4542e8dfd.tar.gz
[lilac] updated to 1.4.0-1
-rw-r--r--.SRCINFO15
-rw-r--r--PKGBUILD15
2 files changed, 24 insertions, 6 deletions
diff --git a/.SRCINFO b/.SRCINFO
index da3d8c300ec0..1b971cae03f8 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,26 +1,35 @@
pkgbase = r-cfdnapro
pkgdesc = cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy
- pkgver = 1.2.0
+ pkgver = 1.4.0
pkgrel = 1
url = https://bioconductor.org/packages/cfDNAPro
arch = any
license = GPL
depends = r
+ depends = r-biocgenerics
depends = r-dplyr
+ depends = r-genomeinfodb
+ depends = r-genomicalignments
+ depends = r-genomicranges
depends = r-ggplot2
+ depends = r-iranges
depends = r-magrittr
+ depends = r-plyranges
depends = r-quantmod
depends = r-rlang
depends = r-rsamtools
depends = r-stringr
+ depends = r-tibble
optdepends = r-biocstyle
+ optdepends = r-bsgenome.hsapiens.ucsc.hg19
+ optdepends = r-bsgenome.hsapiens.ucsc.hg38
optdepends = r-devtools
optdepends = r-ggpubr
optdepends = r-knitr
optdepends = r-rmarkdown
optdepends = r-scales
optdepends = r-testthat
- source = https://bioconductor.org/packages/release/bioc/src/contrib/cfDNAPro_1.2.0.tar.gz
- sha256sums = 803187b841cd8fc307c03ea63258484359a1c901dc63e8e29251504bc4b875ad
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/cfDNAPro_1.4.0.tar.gz
+ sha256sums = 7276758ad677a1cf280f945483adf3e4485f25ff263c0b092165c4e5a47f8110
pkgname = r-cfdnapro
diff --git a/PKGBUILD b/PKGBUILD
index fcd55dc502a5..9142c6126f8a 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,9 +1,9 @@
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=cfDNAPro
-_pkgver=1.2.0
+_pkgver=1.4.0
pkgname=r-${_pkgname,,}
-pkgver=1.2.0
+pkgver=1.4.0
pkgrel=1
pkgdesc='cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy'
arch=('any')
@@ -11,16 +11,25 @@ url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
+ r-biocgenerics
r-dplyr
+ r-genomeinfodb
+ r-genomicalignments
+ r-genomicranges
r-ggplot2
+ r-iranges
r-magrittr
+ r-plyranges
r-quantmod
r-rlang
r-rsamtools
r-stringr
+ r-tibble
)
optdepends=(
r-biocstyle
+ r-bsgenome.hsapiens.ucsc.hg19
+ r-bsgenome.hsapiens.ucsc.hg38
r-devtools
r-ggpubr
r-knitr
@@ -29,7 +38,7 @@ optdepends=(
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('803187b841cd8fc307c03ea63258484359a1c901dc63e8e29251504bc4b875ad')
+sha256sums=('7276758ad677a1cf280f945483adf3e4485f25ff263c0b092165c4e5a47f8110')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"