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authorSukanka2022-06-06 06:11:22 +0800
committerSukanka2022-06-06 06:11:22 +0800
commite344caad0ac109bae45386cd1021177218a7c344 (patch)
treee40550cab26a329896d1d9b401c93a14eb546a23
downloadaur-e344caad0ac109bae45386cd1021177218a7c344.tar.gz
add r-chimeraviz
-rw-r--r--.SRCINFO46
-rw-r--r--PKGBUILD63
2 files changed, 109 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..48c6d97edd5f
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,46 @@
+pkgbase = r-chimeraviz
+ pkgdesc = Visualization tools for gene fusions
+ pkgver = 1.22.0
+ pkgrel = 1
+ url = https://bioconductor.org/packages/chimeraviz
+ arch = any
+ license = Artistic2.0
+ depends = r
+ depends = r-annotationdbi
+ depends = r-annotationfilter
+ depends = r-biocstyle
+ depends = r-biostrings
+ depends = r-checkmate
+ depends = r-data.table
+ depends = r-dplyr
+ depends = r-dt
+ depends = r-ensembldb
+ depends = r-genomeinfodb
+ depends = r-genomicalignments
+ depends = r-genomicranges
+ depends = r-graph
+ depends = r-gtools
+ depends = r-gviz
+ depends = r-iranges
+ depends = r-magick
+ depends = r-org.hs.eg.db
+ depends = r-org.mm.eg.db
+ depends = r-plyr
+ depends = r-rcircos
+ depends = r-rcolorbrewer
+ depends = r-rgraphviz
+ depends = r-rmarkdown
+ depends = r-rsamtools
+ depends = r-s4vectors
+ depends = bowtie
+ depends = samtools
+ optdepends = r-devtools
+ optdepends = r-knitr
+ optdepends = r-lintr
+ optdepends = r-roxygen2
+ optdepends = r-testthat
+ optdepends = grep
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/chimeraviz_1.22.0.tar.gz
+ sha256sums = 80c0e18e4b8295fa638b8a293612b31653cced6abf5881f2a8d03a905603a61a
+
+pkgname = r-chimeraviz
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..7711a10e1b67
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,63 @@
+# system requirements: bowtie, samtools, and egrep are required for somefunctionalities
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=chimeraviz
+_pkgver=1.22.0
+pkgname=r-${_pkgname,,}
+pkgver=1.22.0
+pkgrel=1
+pkgdesc='Visualization tools for gene fusions'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+ r
+ r-annotationdbi
+ r-annotationfilter
+ r-biocstyle
+ r-biostrings
+ r-checkmate
+ r-data.table
+ r-dplyr
+ r-dt
+ r-ensembldb
+ r-genomeinfodb
+ r-genomicalignments
+ r-genomicranges
+ r-graph
+ r-gtools
+ r-gviz
+ r-iranges
+ r-magick
+ r-org.hs.eg.db
+ r-org.mm.eg.db
+ r-plyr
+ r-rcircos
+ r-rcolorbrewer
+ r-rgraphviz
+ r-rmarkdown
+ r-rsamtools
+ r-s4vectors
+ bowtie
+ samtools
+)
+optdepends=(
+ r-devtools
+ r-knitr
+ r-lintr
+ r-roxygen2
+ r-testthat
+ grep
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('80c0e18e4b8295fa638b8a293612b31653cced6abf5881f2a8d03a905603a61a')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: