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author | Sukanka | 2022-06-06 06:11:22 +0800 |
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committer | Sukanka | 2022-06-06 06:11:22 +0800 |
commit | e344caad0ac109bae45386cd1021177218a7c344 (patch) | |
tree | e40550cab26a329896d1d9b401c93a14eb546a23 | |
download | aur-e344caad0ac109bae45386cd1021177218a7c344.tar.gz |
add r-chimeraviz
-rw-r--r-- | .SRCINFO | 46 | ||||
-rw-r--r-- | PKGBUILD | 63 |
2 files changed, 109 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..48c6d97edd5f --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,46 @@ +pkgbase = r-chimeraviz + pkgdesc = Visualization tools for gene fusions + pkgver = 1.22.0 + pkgrel = 1 + url = https://bioconductor.org/packages/chimeraviz + arch = any + license = Artistic2.0 + depends = r + depends = r-annotationdbi + depends = r-annotationfilter + depends = r-biocstyle + depends = r-biostrings + depends = r-checkmate + depends = r-data.table + depends = r-dplyr + depends = r-dt + depends = r-ensembldb + depends = r-genomeinfodb + depends = r-genomicalignments + depends = r-genomicranges + depends = r-graph + depends = r-gtools + depends = r-gviz + depends = r-iranges + depends = r-magick + depends = r-org.hs.eg.db + depends = r-org.mm.eg.db + depends = r-plyr + depends = r-rcircos + depends = r-rcolorbrewer + depends = r-rgraphviz + depends = r-rmarkdown + depends = r-rsamtools + depends = r-s4vectors + depends = bowtie + depends = samtools + optdepends = r-devtools + optdepends = r-knitr + optdepends = r-lintr + optdepends = r-roxygen2 + optdepends = r-testthat + optdepends = grep + source = https://bioconductor.org/packages/release/bioc/src/contrib/chimeraviz_1.22.0.tar.gz + sha256sums = 80c0e18e4b8295fa638b8a293612b31653cced6abf5881f2a8d03a905603a61a + +pkgname = r-chimeraviz diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..7711a10e1b67 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,63 @@ +# system requirements: bowtie, samtools, and egrep are required for somefunctionalities +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=chimeraviz +_pkgver=1.22.0 +pkgname=r-${_pkgname,,} +pkgver=1.22.0 +pkgrel=1 +pkgdesc='Visualization tools for gene fusions' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-annotationdbi + r-annotationfilter + r-biocstyle + r-biostrings + r-checkmate + r-data.table + r-dplyr + r-dt + r-ensembldb + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-graph + r-gtools + r-gviz + r-iranges + r-magick + r-org.hs.eg.db + r-org.mm.eg.db + r-plyr + r-rcircos + r-rcolorbrewer + r-rgraphviz + r-rmarkdown + r-rsamtools + r-s4vectors + bowtie + samtools +) +optdepends=( + r-devtools + r-knitr + r-lintr + r-roxygen2 + r-testthat + grep +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('80c0e18e4b8295fa638b8a293612b31653cced6abf5881f2a8d03a905603a61a') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |