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| author | Sukanka | 2022-06-06 06:16:04 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 06:16:04 +0800 |
| commit | cb3f7e13e833ec46daef5f9b24907c6e477dae1d (patch) | |
| tree | fe7a07abd2c1324cd7ce245dfe4fec9bb7cf1029 | |
| download | aur-cb3f7e13e833ec46daef5f9b24907c6e477dae1d.tar.gz | |
add r-chipxpress
| -rw-r--r-- | .SRCINFO | 24 | ||||
| -rw-r--r-- | PKGBUILD | 40 |
2 files changed, 64 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..e8ed90554709 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,24 @@ +pkgbase = r-chipxpress + pkgdesc = ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles + pkgver = 1.40.0 + pkgrel = 1 + url = https://bioconductor.org/packages/ChIPXpress + arch = any + license = GPL + depends = r + depends = r-affy + depends = r-biganalytics + depends = r-bigmemory + depends = r-biobase + depends = r-chipxpressdata + depends = r-frma + depends = r-geoquery + optdepends = r-biocgenerics + optdepends = r-mouse4302.db + optdepends = r-mouse4302cdf + optdepends = r-mouse4302frmavecs + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/ChIPXpress_1.40.0.tar.gz + sha256sums = cafeb3eb2431689ddf4913904a81f2c65af03730401c43e695eb40bef7dd13f1 + +pkgname = r-chipxpress diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..03c4a81c5613 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,40 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=ChIPXpress +_pkgver=1.40.0 +pkgname=r-${_pkgname,,} +pkgver=1.40.0 +pkgrel=1 +pkgdesc='ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-affy + r-biganalytics + r-bigmemory + r-biobase + r-chipxpressdata + r-frma + r-geoquery +) +optdepends=( + r-biocgenerics + r-mouse4302.db + r-mouse4302cdf + r-mouse4302frmavecs + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('cafeb3eb2431689ddf4913904a81f2c65af03730401c43e695eb40bef7dd13f1') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |