add r-chromscape

2 files changed, 150 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f85e308c30c0
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,67 @@
+pkgbase = r-chromscape
+	pkgdesc = Analysis of single-cell epigenomics datasets with a Shiny App
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/ChromSCape
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-batchelor
+	depends = r-biocparallel
+	depends = r-colorramps
+	depends = r-colourpicker
+	depends = r-consensusclusterplus
+	depends = r-coop
+	depends = r-delayedarray
+	depends = r-dplyr
+	depends = r-dt
+	depends = r-edger
+	depends = r-forcats
+	depends = r-fs
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-iranges
+	depends = r-irlba
+	depends = r-jsonlite
+	depends = r-kableextra
+	depends = r-matrixtests
+	depends = r-msigdbr
+	depends = r-plotly
+	depends = r-qs
+	depends = r-qualv
+	depends = r-rcpp
+	depends = r-rlist
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-rtsne
+	depends = r-s4vectors
+	depends = r-scater
+	depends = r-scran
+	depends = r-shiny
+	depends = r-shinycssloaders
+	depends = r-shinydashboard
+	depends = r-shinydashboardplus
+	depends = r-shinyfiles
+	depends = r-shinyhelper
+	depends = r-shinyjs
+	depends = r-shinywidgets
+	depends = r-singlecellexperiment
+	depends = r-stringdist
+	depends = r-summarizedexperiment
+	depends = r-sushi
+	depends = r-tibble
+	depends = r-tidyr
+	depends = r-umap
+	depends = r-viridis
+	depends = r-gggenes
+	optdepends = r-biocstyle
+	optdepends = r-future
+	optdepends = r-knitr
+	optdepends = r-markdown
+	optdepends = r-rmarkdown
+	optdepends = r-signac
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ChromSCape_1.6.0.tar.gz
+	sha256sums = 30abed31221e86e32a21a32f2e2c6428bf67eeb31965da468d8b56aa2f057343
+
+pkgname = r-chromscape
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..df4af11e0499
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,83 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ChromSCape
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='Analysis of single-cell epigenomics datasets with a Shiny App'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-batchelor
+  r-biocparallel
+  r-colorramps
+  r-colourpicker
+  r-consensusclusterplus
+  r-coop
+  r-delayedarray
+  r-dplyr
+  r-dt
+  r-edger
+  r-forcats
+  r-fs
+  r-genomicranges
+  r-ggplot2
+  r-iranges
+  r-irlba
+  r-jsonlite
+  r-kableextra
+  r-matrixtests
+  r-msigdbr
+  r-plotly
+  r-qs
+  r-qualv
+  r-rcpp
+  r-rlist
+  r-rsamtools
+  r-rtracklayer
+  r-rtsne
+  r-s4vectors
+  r-scater
+  r-scran
+  r-shiny
+  r-shinycssloaders
+  r-shinydashboard
+  r-shinydashboardplus
+  r-shinyfiles
+  r-shinyhelper
+  r-shinyjs
+  r-shinywidgets
+  r-singlecellexperiment
+  r-stringdist
+  r-summarizedexperiment
+  r-sushi
+  r-tibble
+  r-tidyr
+  r-umap
+  r-viridis
+  r-gggenes
+)
+optdepends=(
+  r-biocstyle
+  r-future
+  r-knitr
+  r-markdown
+  r-rmarkdown
+  r-signac
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('30abed31221e86e32a21a32f2e2c6428bf67eeb31965da468d8b56aa2f057343')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: