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authorSukanka2022-06-06 06:21:35 +0800
committerSukanka2022-06-06 06:21:35 +0800
commit280cfd9612bb44ae5f6427ccfa57635ee9af88d9 (patch)
tree007cff802f9cce6e821483559ff81860a89ffd85
downloadaur-280cfd9612bb44ae5f6427ccfa57635ee9af88d9.tar.gz
add r-chronos
-rw-r--r--.SRCINFO28
-rw-r--r--PKGBUILD45
2 files changed, 73 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 00000000000..56c54825b9e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = r-chronos
+ pkgdesc = CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
+ pkgver = 1.24.0
+ pkgrel = 1
+ url = https://bioconductor.org/packages/CHRONOS
+ arch = any
+ license = GPL
+ depends = r
+ depends = r-biomart
+ depends = r-circlize
+ depends = r-doparallel
+ depends = r-foreach
+ depends = r-graph
+ depends = r-igraph
+ depends = r-openxlsx
+ depends = r-rbgl
+ depends = r-rcurl
+ depends = r-rjava
+ depends = r-xml
+ depends = pandoc
+ optdepends = r-biocgenerics
+ optdepends = r-knitr
+ optdepends = r-rmarkdown
+ optdepends = r-runit
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/CHRONOS_1.24.0.tar.gz
+ sha256sums = 154157f05d7d2608157dcb11519ce5e1d2e965c5ff860413d900c02e5aa93858
+
+pkgname = r-chronos
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 00000000000..34dda7b1119
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# system requirements: Java version >= 1.7, Pandoc
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=CHRONOS
+_pkgver=1.24.0
+pkgname=r-${_pkgname,,}
+pkgver=1.24.0
+pkgrel=1
+pkgdesc='CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+ r
+ r-biomart
+ r-circlize
+ r-doparallel
+ r-foreach
+ r-graph
+ r-igraph
+ r-openxlsx
+ r-rbgl
+ r-rcurl
+ r-rjava
+ r-xml
+ pandoc
+)
+optdepends=(
+ r-biocgenerics
+ r-knitr
+ r-rmarkdown
+ r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('154157f05d7d2608157dcb11519ce5e1d2e965c5ff860413d900c02e5aa93858')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: