add r-clumsid

2 files changed, 89 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..c0af95dd6045
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,36 @@
+pkgbase = r-clumsid
+	pkgdesc = Clustering of MS2 Spectra for Metabolite Identification
+	pkgver = 1.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/CluMSID
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-ape
+	depends = r-biobase
+	depends = r-dbscan
+	depends = r-ggally
+	depends = r-ggplot2
+	depends = r-gplots
+	depends = r-msnbase
+	depends = r-mzr
+	depends = r-network
+	depends = r-plotly
+	depends = r-rcolorbrewer
+	depends = r-s4vectors
+	depends = r-sna
+	optdepends = r-clumsiddata
+	optdepends = r-dplyr
+	optdepends = r-knitr
+	optdepends = r-magrittr
+	optdepends = r-metams
+	optdepends = r-metamsdata
+	optdepends = r-readr
+	optdepends = r-rmarkdown
+	optdepends = r-stringr
+	optdepends = r-testthat
+	optdepends = r-xcms
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/CluMSID_1.12.0.tar.gz
+	sha256sums = 708378ef3181c0ff3ef770ab79727ae2c3137c1bc3932c31958cbac29ba1353d
+
+pkgname = r-clumsid
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4d991074a69e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=CluMSID
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=1
+pkgdesc='Clustering of MS2 Spectra for Metabolite Identification'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-ape
+  r-biobase
+  r-dbscan
+  r-ggally
+  r-ggplot2
+  r-gplots
+  r-msnbase
+  r-mzr
+  r-network
+  r-plotly
+  r-rcolorbrewer
+  r-s4vectors
+  r-sna
+)
+optdepends=(
+  r-clumsiddata
+  r-dplyr
+  r-knitr
+  r-magrittr
+  r-metams
+  r-metamsdata
+  r-readr
+  r-rmarkdown
+  r-stringr
+  r-testthat
+  r-xcms
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('708378ef3181c0ff3ef770ab79727ae2c3137c1bc3932c31958cbac29ba1353d')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: