add r-cma

2 files changed, 68 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d2faa26dbe0f
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,26 @@
+pkgbase = r-cma
+	pkgdesc = Synthesis of microarray-based classification
+	pkgver = 1.54.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/CMA
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biobase
+	optdepends = r-class
+	optdepends = r-corpcor
+	optdepends = r-e1071
+	optdepends = r-gbm
+	optdepends = r-glmnet
+	optdepends = r-limma
+	optdepends = r-mass
+	optdepends = r-mgcv
+	optdepends = r-mvtnorm
+	optdepends = r-nnet
+	optdepends = r-plsgenomics
+	optdepends = r-randomforest
+	optdepends = r-st
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/CMA_1.54.0.tar.gz
+	sha256sums = 7f31d827fee2e0f874f3d6c1686e76d24a5474b054c3bab7317394d05b90882e
+
+pkgname = r-cma
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5f732798f96d
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,42 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=CMA
+_pkgver=1.54.0
+pkgname=r-${_pkgname,,}
+pkgver=1.54.0
+pkgrel=1
+pkgdesc='Synthesis of microarray-based classification'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+)
+optdepends=(
+  r-class
+  r-corpcor
+  r-e1071
+  r-gbm
+  r-glmnet
+  r-limma
+  r-mass
+  r-mgcv
+  r-mvtnorm
+  r-nnet
+  r-plsgenomics
+  r-randomforest
+  r-st
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('7f31d827fee2e0f874f3d6c1686e76d24a5474b054c3bab7317394d05b90882e')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: