add r-cmapr

2 files changed, 59 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..74271654f74a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = r-cmapr
+	pkgdesc = CMap Tools in R
+	pkgver = 1.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/cmapR
+	arch = any
+	license = custom
+	depends = r
+	depends = r-data.table
+	depends = r-flowcore
+	depends = r-matrixstats
+	depends = r-rhdf5
+	depends = r-summarizedexperiment
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/cmapR_1.8.0.tar.gz
+	sha256sums = 32c27584bf4842da8f8960518c4e9de0b249cc90d299430574962cf8918b0942
+
+pkgname = r-cmapr
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..03ac2400ec27
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,38 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=cmapR
+_pkgver=1.8.0
+pkgname=r-${_pkgname,,}
+pkgver=1.8.0
+pkgrel=1
+pkgdesc='CMap Tools in R'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('custom')
+depends=(
+  r
+  r-data.table
+  r-flowcore
+  r-matrixstats
+  r-rhdf5
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('32c27584bf4842da8f8960518c4e9de0b249cc90d299430574962cf8918b0942')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: