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author | Sukanka | 2022-06-06 06:40:51 +0800 |
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committer | Sukanka | 2022-06-06 06:40:51 +0800 |
commit | 90e4c169de41ef260d8dd4f963cd06f82f1fca92 (patch) | |
tree | 7877b0db9801b3d46c6ffb238a8587de2fcc2eb9 | |
download | aur-90e4c169de41ef260d8dd4f963cd06f82f1fca92.tar.gz |
add r-cner
-rw-r--r-- | .SRCINFO | 41 | ||||
-rw-r--r-- | PKGBUILD | 57 |
2 files changed, 98 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..160c751fd11b --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,41 @@ +pkgbase = r-cner + pkgdesc = CNE Detection and Visualization + pkgver = 1.32.0 + pkgrel = 1 + url = https://bioconductor.org/packages/CNEr + arch = x86_64 + license = GPL + depends = r + depends = r-annotate + depends = r-biocgenerics + depends = r-biostrings + depends = r-dbi + depends = r-genomeinfodb + depends = r-genomicalignments + depends = r-genomicranges + depends = r-ggplot2 + depends = r-go.db + depends = r-iranges + depends = r-keggrest + depends = r-powerlaw + depends = r-r.utils + depends = r-readr + depends = r-reshape2 + depends = r-rsqlite + depends = r-rtracklayer + depends = r-s4vectors + depends = r-xvector + optdepends = r-biocstyle + optdepends = r-bsgenome.drerio.ucsc.danrer10 + optdepends = r-bsgenome.ggallus.ucsc.galgal3 + optdepends = r-bsgenome.hsapiens.ucsc.hg19 + optdepends = r-bsgenome.hsapiens.ucsc.hg38 + optdepends = r-gviz + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + optdepends = r-txdb.drerio.ucsc.danrer10.refgene + source = https://bioconductor.org/packages/release/bioc/src/contrib/CNEr_1.32.0.tar.gz + sha256sums = 780a43bba1307625b1bf395c20a22002b7338ea3796f2e20eef95ab45dc9fb17 + +pkgname = r-cner diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..1cf0984101ce --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,57 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=CNEr +_pkgver=1.32.0 +pkgname=r-${_pkgname,,} +pkgver=1.32.0 +pkgrel=1 +pkgdesc='CNE Detection and Visualization' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-annotate + r-biocgenerics + r-biostrings + r-dbi + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-ggplot2 + r-go.db + r-iranges + r-keggrest + r-powerlaw + r-r.utils + r-readr + r-reshape2 + r-rsqlite + r-rtracklayer + r-s4vectors + r-xvector +) +optdepends=( + r-biocstyle + r-bsgenome.drerio.ucsc.danrer10 + r-bsgenome.ggallus.ucsc.galgal3 + r-bsgenome.hsapiens.ucsc.hg19 + r-bsgenome.hsapiens.ucsc.hg38 + r-gviz + r-knitr + r-rmarkdown + r-testthat + r-txdb.drerio.ucsc.danrer10.refgene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('780a43bba1307625b1bf395c20a22002b7338ea3796f2e20eef95ab45dc9fb17') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |