add r-cnvgsa

2 files changed, 54 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..affc944c7d67
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,19 @@
+pkgbase = r-cnvgsa
+	pkgdesc = Gene Set Analysis of (Rare) Copy Number Variants
+	pkgver = 1.40.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/cnvGSA
+	arch = any
+	license = LGPL
+	depends = r
+	depends = r-brglm
+	depends = r-doparallel
+	depends = r-foreach
+	depends = r-genomicranges
+	depends = r-splitstackshape
+	optdepends = r-cnvgsadata
+	optdepends = r-org.hs.eg.db
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/cnvGSA_1.40.0.tar.gz
+	sha256sums = 4c4fbd7580a7284b78b9b5d0d8ca2bf9051033afd554759e2b793c1285b17373
+
+pkgname = r-cnvgsa
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..c32fc6d48778
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,35 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=cnvGSA
+_pkgver=1.40.0
+pkgname=r-${_pkgname,,}
+pkgver=1.40.0
+pkgrel=1
+pkgdesc='Gene Set Analysis of (Rare) Copy Number Variants'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-brglm
+  r-doparallel
+  r-foreach
+  r-genomicranges
+  r-splitstackshape
+)
+optdepends=(
+  r-cnvgsadata
+  r-org.hs.eg.db
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('4c4fbd7580a7284b78b9b5d0d8ca2bf9051033afd554759e2b793c1285b17373')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: