Version 1.6.0

2 files changed, 73 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..89ffdfa33596
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,25 @@
+pkgbase = r-cnvmetrics
+	pkgdesc = Copy Number Variant Metrics
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/CNVMetrics
+	arch = any
+	license = Artistic2.0
+	checkdepends = r-testthat
+	depends = r-biocparallel
+	depends = r-genomicranges
+	depends = r-gridextra
+	depends = r-iranges
+	depends = r-magrittr
+	depends = r-pheatmap
+	depends = r-rbeta2009
+	depends = r-s4vectors
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/CNVMetrics_1.6.0.tar.gz
+	md5sums = ebb4f847744aaddcc125d870b1a67154
+	sha256sums = 95db84f879b5726ae2389ee54bafc8966fa9aeb9bf3c65cd4ffbdb665823c49a
+
+pkgname = r-cnvmetrics
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d70d33f7cc84
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=CNVMetrics
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Copy Number Variant Metrics"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(Artistic2.0)
+depends=(
+  r-biocparallel
+  r-genomicranges
+  r-gridextra
+  r-iranges
+  r-magrittr
+  r-pheatmap
+  r-rbeta2009
+  r-s4vectors
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('ebb4f847744aaddcc125d870b1a67154')
+sha256sums=('95db84f879b5726ae2389ee54bafc8966fa9aeb9bf3c65cd4ffbdb665823c49a')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}