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| author | Sukanka | 2022-06-06 06:50:32 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 06:50:32 +0800 |
| commit | 24ea220f8fbcdeccafd36d504940d35ac8ab442e (patch) | |
| tree | b56f7d9edacdf44f6425b054f6b49eeaff43ef9a | |
| download | aur-24ea220f8fbcdeccafd36d504940d35ac8ab442e.tar.gz | |
add r-cogito
| -rw-r--r-- | .SRCINFO | 28 | ||||
| -rw-r--r-- | PKGBUILD | 44 |
2 files changed, 72 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..ada6d4ac3be1 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,28 @@ +pkgbase = r-cogito + pkgdesc = Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets + pkgver = 1.2.0 + pkgrel = 1 + url = https://bioconductor.org/packages/Cogito + arch = any + license = LGPL + depends = r + depends = r-annotationdbi + depends = r-biocmanager + depends = r-entropy + depends = r-genomeinfodb + depends = r-genomicfeatures + depends = r-genomicranges + depends = r-ggplot2 + depends = r-jsonlite + depends = r-magrittr + depends = r-rmarkdown + depends = r-s4vectors + depends = r-txdb.mmusculus.ucsc.mm9.knowngene + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-markdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/Cogito_1.2.0.tar.gz + sha256sums = 67c0f10bd1640e5e0f5869374976548688cc3b418c980016ffd762dcd8e95069 + +pkgname = r-cogito diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..1da42b5a74cb --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,44 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=Cogito +_pkgver=1.2.0 +pkgname=r-${_pkgname,,} +pkgver=1.2.0 +pkgrel=1 +pkgdesc='Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('LGPL') +depends=( + r + r-annotationdbi + r-biocmanager + r-entropy + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-ggplot2 + r-jsonlite + r-magrittr + r-rmarkdown + r-s4vectors + r-txdb.mmusculus.ucsc.mm9.knowngene +) +optdepends=( + r-biocstyle + r-knitr + r-markdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('67c0f10bd1640e5e0f5869374976548688cc3b418c980016ffd762dcd8e95069') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |