add r-compcoder

2 files changed, 98 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..54b461320f2e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,41 @@
+pkgbase = r-compcoder
+	pkgdesc = RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
+	pkgver = 1.32.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/compcodeR
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-catools
+	depends = r-edger
+	depends = r-ggplot2
+	depends = r-gplots
+	depends = r-gtools
+	depends = r-knitr
+	depends = r-limma
+	depends = r-markdown
+	depends = r-modeest
+	depends = r-rocr
+	depends = r-sm
+	depends = r-stringr
+	depends = r-vioplot
+	depends = tk
+	depends = r-matrixstats
+	depends = r-ape
+	depends = r-phylolm
+	optdepends = r-bayseq
+	optdepends = r-biocstyle
+	optdepends = r-deseq2
+	optdepends = r-dss
+	optdepends = r-ebseq
+	optdepends = r-genefilter
+	optdepends = r-nbpseq
+	optdepends = r-noiseq
+	optdepends = r-rmarkdown
+	optdepends = r-rpanel
+	optdepends = r-tcc
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/compcodeR_1.32.0.tar.gz
+	sha256sums = f18f53a5ad354307bd015314d63dd2567637d05af60b26457ed6c445d58f12f6
+
+pkgname = r-compcoder
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..c38a52fbf79b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,57 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=compcodeR
+_pkgver=1.32.0
+pkgname=r-${_pkgname,,}
+pkgver=1.32.0
+pkgrel=1
+pkgdesc='RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-catools
+  r-edger
+  r-ggplot2
+  r-gplots
+  r-gtools
+  r-knitr
+  r-limma
+  r-markdown
+  r-modeest
+  r-rocr
+  r-sm
+  r-stringr
+  r-vioplot
+  tk
+  r-matrixstats
+  r-ape
+  r-phylolm
+)
+optdepends=(
+  r-bayseq
+  r-biocstyle
+  r-deseq2
+  r-dss
+  r-ebseq
+  r-genefilter
+  r-nbpseq
+  r-noiseq
+  r-rmarkdown
+  r-rpanel
+  r-tcc
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f18f53a5ad354307bd015314d63dd2567637d05af60b26457ed6c445d58f12f6')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: