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| author | Sukanka | 2022-06-06 07:06:28 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 07:06:28 +0800 |
| commit | bde8e72f50ada68f7c3347d4f2416729131ce5a6 (patch) | |
| tree | 451377e41abe7f8fbacd6b3897a0cf095d3e95e3 | |
| download | aur-bde8e72f50ada68f7c3347d4f2416729131ce5a6.tar.gz | |
add r-conumee
| -rw-r--r-- | .SRCINFO | 27 | ||||
| -rw-r--r-- | PKGBUILD | 43 |
2 files changed, 70 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..cbbe935521f1 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,27 @@ +pkgbase = r-conumee + pkgdesc = Enhanced copy-number variation analysis using Illumina DNA methylation arrays + pkgver = 1.30.0 + pkgrel = 1 + url = https://bioconductor.org/packages/conumee + arch = any + license = GPL + depends = r + depends = r-dnacopy + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-illuminahumanmethylation450kanno.ilmn12.hg19 + depends = r-illuminahumanmethylation450kmanifest + depends = r-illuminahumanmethylationepicanno.ilm10b2.hg19 + depends = r-illuminahumanmethylationepicmanifest + depends = r-iranges + depends = r-minfi + depends = r-rtracklayer + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-minfidata + optdepends = r-rcurl + optdepends = r-rmarkdown + source = https://bioconductor.org/packages/release/bioc/src/contrib/conumee_1.30.0.tar.gz + sha256sums = c80828acdc1855186d6c85cd15c84871a344e2060a43cdf974ad4ffdf736efdf + +pkgname = r-conumee diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..88bb02ecc2ee --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,43 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=conumee +_pkgver=1.30.0 +pkgname=r-${_pkgname,,} +pkgver=1.30.0 +pkgrel=1 +pkgdesc='Enhanced copy-number variation analysis using Illumina DNA methylation arrays' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-dnacopy + r-genomeinfodb + r-genomicranges + r-illuminahumanmethylation450kanno.ilmn12.hg19 + r-illuminahumanmethylation450kmanifest + r-illuminahumanmethylationepicanno.ilm10b2.hg19 + r-illuminahumanmethylationepicmanifest + r-iranges + r-minfi + r-rtracklayer +) +optdepends=( + r-biocstyle + r-knitr + r-minfidata + r-rcurl + r-rmarkdown +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('c80828acdc1855186d6c85cd15c84871a344e2060a43cdf974ad4ffdf736efdf') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |