Version 1.6.0

2 files changed, 80 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..fa0515e6434b
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,27 @@
+pkgbase = r-crisprscore
+	pkgdesc = On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/crisprScore
+	arch = any
+	license = MIT
+	checkdepends = r-testthat
+	depends = r-basilisk
+	depends = r-basilisk.utils
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-crisprscoredata
+	depends = r-iranges
+	depends = r-randomforest
+	depends = r-reticulate
+	depends = r-stringr
+	depends = r-xvector
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/crisprScore_1.6.0.tar.gz
+	md5sums = c83f7928b03ce0308175835556dfcb54
+	sha256sums = dea74cc8cc0cbe2ac8d0280230b114e426356694b5845764a1adc8e49f6c3828
+
+pkgname = r-crisprscore
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..f79316b660c6
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=crisprScore
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  r-basilisk
+  r-basilisk.utils
+  r-biocgenerics
+  r-biostrings
+  r-crisprscoredata
+  r-iranges
+  r-randomforest
+  r-reticulate
+  r-stringr
+  r-xvector
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('c83f7928b03ce0308175835556dfcb54')
+sha256sums=('dea74cc8cc0cbe2ac8d0280230b114e426356694b5845764a1adc8e49f6c3828')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}