add r-crossmeta

2 files changed, 128 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..c282fe3ca684
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,55 @@
+pkgbase = r-crossmeta
+	pkgdesc = Cross Platform Meta-Analysis of Microarray Data
+	pkgver = 1.22.1
+	pkgrel = 3
+	url = https://bioconductor.org/packages/crossmeta
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-affxparser
+	depends = r-affy
+	depends = r-annotationdbi
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocmanager
+	depends = r-data.table
+	depends = r-dbi
+	depends = r-deseq2
+	depends = r-dt
+	depends = r-edger
+	depends = r-fdrtool
+	depends = r-geoquery
+	depends = r-limma
+	depends = r-matrixstats
+	depends = r-metama
+	depends = r-miniui
+	depends = r-oligo
+	depends = r-rcolorbrewer
+	depends = r-rcurl
+	depends = r-reader
+	depends = r-readxl
+	depends = r-rsqlite
+	depends = r-shiny
+	depends = r-shinybs
+	depends = r-shinyjs
+	depends = r-shinypanel
+	depends = r-shinywidgets
+	depends = r-statmod
+	depends = r-stringr
+	depends = r-summarizedexperiment
+	depends = r-sva
+	depends = r-tibble
+	depends = r-xml
+	depends = libxml2
+	depends = openssh
+	depends = curl
+	optdepends = r-knitr
+	optdepends = r-lydata
+	optdepends = r-org.hs.eg.db
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-tximportdata
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/crossmeta_1.22.1.tar.gz
+	sha256sums = 9aad965ab2332e8001a2cc0eff4fd4ae9859a77dadf117870135ebb242d00be3
+
+pkgname = r-crossmeta
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d7e3d0d680e1
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,73 @@
+# system requirements: libxml2: libxml2-dev (deb), libxml2-devel (rpm)libcurl: libcurl4-openssl-dev (deb), libcurl-devel (rpm)openssl: libssl-dev (deb), openssl-devel (rpm), libssl_dev(csw), openssl@1.1 (brew)
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=crossmeta
+_pkgver=1.22.1
+pkgname=r-${_pkgname,,}
+pkgver=1.22.1
+pkgrel=3
+pkgdesc='Cross Platform Meta-Analysis of Microarray Data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-affxparser
+  r-affy
+  r-annotationdbi
+  r-biobase
+  r-biocgenerics
+  r-biocmanager
+  r-data.table
+  r-dbi
+  r-deseq2
+  r-dt
+  r-edger
+  r-fdrtool
+  r-geoquery
+  r-limma
+  r-matrixstats
+  r-metama
+  r-miniui
+  r-oligo
+  r-rcolorbrewer
+  r-rcurl
+  r-reader
+  r-readxl
+  r-rsqlite
+  r-shiny
+  r-shinybs
+  r-shinyjs
+  r-shinypanel
+  r-shinywidgets
+  r-statmod
+  r-stringr
+  r-summarizedexperiment
+  r-sva
+  r-tibble
+  r-xml
+  libxml2
+  openssh
+  curl
+)
+optdepends=(
+  r-knitr
+  r-lydata
+  r-org.hs.eg.db
+  r-rmarkdown
+  r-testthat
+  r-tximportdata
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('9aad965ab2332e8001a2cc0eff4fd4ae9859a77dadf117870135ebb242d00be3')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: