add r-csaw

2 files changed, 93 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..cd3633fbda61
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,38 @@
+pkgbase = r-csaw
+	pkgdesc = ChIP-Seq Analysis with Windows
+	pkgver = 1.30.1
+	pkgrel = 3
+	url = https://bioconductor.org/packages/csaw
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-edger
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-limma
+	depends = r-metapod
+	depends = r-rcpp
+	depends = r-rhtslib
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-zlibbioc
+	depends = gcc
+	depends = make
+	optdepends = r-annotationdbi
+	optdepends = r-biocmanager
+	optdepends = r-biocstyle
+	optdepends = r-genomicalignments
+	optdepends = r-genomicfeatures
+	optdepends = r-knitr
+	optdepends = r-org.mm.eg.db
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-txdb.mmusculus.ucsc.mm10.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/csaw_1.30.1.tar.gz
+	sha256sums = a38512cc4db8865a70623d60db29e4d4f05c476c6a0de776110cbc50c4cbde89
+
+pkgname = r-csaw
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..f6237dc4637e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,55 @@
+# system requirements: C++11, GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=csaw
+_pkgver=1.30.1
+pkgname=r-${_pkgname,,}
+pkgver=1.30.1
+pkgrel=3
+pkgdesc='ChIP-Seq Analysis with Windows'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-biocparallel
+  r-edger
+  r-genomeinfodb
+  r-genomicranges
+  r-iranges
+  r-limma
+  r-metapod
+  r-rcpp
+  r-rhtslib
+  r-rsamtools
+  r-s4vectors
+  r-summarizedexperiment
+  r-zlibbioc
+  gcc
+  make
+)
+optdepends=(
+  r-annotationdbi
+  r-biocmanager
+  r-biocstyle
+  r-genomicalignments
+  r-genomicfeatures
+  r-knitr
+  r-org.mm.eg.db
+  r-rmarkdown
+  r-testthat
+  r-txdb.mmusculus.ucsc.mm10.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a38512cc4db8865a70623d60db29e4d4f05c476c6a0de776110cbc50c4cbde89')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: