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| author | Pekka Ristola | 2023-11-30 15:26:01 +0200 |
|---|---|---|
| committer | Pekka Ristola | 2023-11-30 15:26:01 +0200 |
| commit | fc080b0f34b128e0aa383a9d46706eebac692232 (patch) | |
| tree | 53cab0a62663d7ba1cc76122a5bae88da62699bd | |
| download | aur-fc080b0f34b128e0aa383a9d46706eebac692232.tar.gz | |
Version 1.4.0
| -rw-r--r-- | .SRCINFO | 21 | ||||
| -rw-r--r-- | PKGBUILD | 44 |
2 files changed, 65 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..8de827b07308 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,21 @@ +pkgbase = r-ctsv + pkgdesc = Identification of cell-type-specific spatially variable genes accounting for excess zeros + pkgver = 1.4.0 + pkgrel = 1 + url = https://bioconductor.org/packages/CTSV + arch = any + license = GPL3 + checkdepends = r-testthat + depends = r-biocparallel + depends = r-knitr + depends = r-pscl + depends = r-qvalue + depends = r-spatialexperiment + depends = r-summarizedexperiment + optdepends = r-biocstyle + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/CTSV_1.4.0.tar.gz + md5sums = 4a3f8c7b5398449ea01b312ed7da1f43 + sha256sums = c9ab303473fa093de52c3a25dc2e46413399cef5284aa2c177299c03e61fcc02 + +pkgname = r-ctsv diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..233b10c9a976 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,44 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=CTSV +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Identification of cell-type-specific spatially variable genes accounting for excess zeros" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL3) +depends=( + r-biocparallel + r-knitr + r-pscl + r-qvalue + r-spatialexperiment + r-summarizedexperiment +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('4a3f8c7b5398449ea01b312ed7da1f43') +sha256sums=('c9ab303473fa093de52c3a25dc2e46413399cef5284aa2c177299c03e61fcc02') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |