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| author | Sukanka | 2022-06-06 07:28:24 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 07:28:24 +0800 |
| commit | 33954a9d4fc4958e82b6893a035d849bd6e66bda (patch) | |
| tree | e46076fe31f4d4d6308ae8653d08523f9b9912c3 | |
| download | aur-33954a9d4fc4958e82b6893a035d849bd6e66bda.tar.gz | |
add r-curatedtcgadata
| -rw-r--r-- | .SRCINFO | 25 | ||||
| -rw-r--r-- | PKGBUILD | 41 |
2 files changed, 66 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..d189493fde7a --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,25 @@ +pkgbase = r-curatedtcgadata + pkgdesc = Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects + pkgver = 1.18.0 + pkgrel = 1 + url = https://bioconductor.org/packages/curatedTCGAData + arch = any + license = Artistic2.0 + depends = r + depends = r-annotationhub + depends = r-experimenthub + depends = r-hdf5array + depends = r-multiassayexperiment + depends = r-s4vectors + depends = r-summarizedexperiment + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-raggedexperiment + optdepends = r-readr + optdepends = r-rmarkdown + optdepends = r-tcgautils + optdepends = r-testthat + source = https://bioconductor.org/packages/release/data/experiment/src/contrib/curatedTCGAData_1.18.0.tar.gz + sha256sums = f9f268f5e68541fdb1742f1af146f4f895b19e6c7a049f1d44d6436a3cbf7540 + +pkgname = r-curatedtcgadata diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..c3aff8170a82 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,41 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=curatedTCGAData +_pkgver=1.18.0 +pkgname=r-${_pkgname,,} +pkgver=1.18.0 +pkgrel=1 +pkgdesc='Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-annotationhub + r-experimenthub + r-hdf5array + r-multiassayexperiment + r-s4vectors + r-summarizedexperiment +) +optdepends=( + r-biocstyle + r-knitr + r-raggedexperiment + r-readr + r-rmarkdown + r-tcgautils + r-testthat +) +source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('f9f268f5e68541fdb1742f1af146f4f895b19e6c7a049f1d44d6436a3cbf7540') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |