add r-cytokernel

2 files changed, 70 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..04723e6f48d6
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,27 @@
+pkgbase = r-cytokernel
+	pkgdesc = Differential expression using kernel-based score test
+	pkgver = 1.2.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/cytoKernel
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-ashr
+	depends = r-biocparallel
+	depends = r-circlize
+	depends = r-complexheatmap
+	depends = r-data.table
+	depends = r-dplyr
+	depends = r-magrittr
+	depends = r-rcpp
+	depends = r-rlang
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/cytoKernel_1.2.0.tar.gz
+	sha256sums = d563a0f2c33d5bdec026962b0376c15d7bee3ad650176035e67c0dde687d89c0
+
+pkgname = r-cytokernel
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..668545793c1c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,43 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=cytoKernel
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=1.2.0
+pkgrel=1
+pkgdesc='Differential expression using kernel-based score test'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-ashr
+  r-biocparallel
+  r-circlize
+  r-complexheatmap
+  r-data.table
+  r-dplyr
+  r-magrittr
+  r-rcpp
+  r-rlang
+  r-s4vectors
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d563a0f2c33d5bdec026962b0376c15d7bee3ad650176035e67c0dde687d89c0')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: