add r-cytoml

2 files changed, 110 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..077e6dc0cdd1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,46 @@
+pkgbase = r-cytoml
+	pkgdesc = A GatingML Interface for Cross Platform Cytometry Data Sharing
+	pkgver = 2.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/CytoML
+	arch = x86_64
+	license = custom
+	depends = r
+	depends = r-base64enc
+	depends = r-bh
+	depends = r-biobase
+	depends = r-corpcor
+	depends = r-cytolib
+	depends = r-data.table
+	depends = r-dplyr
+	depends = r-flowcore
+	depends = r-flowworkspace
+	depends = r-ggcyto
+	depends = r-graph
+	depends = r-jsonlite
+	depends = r-opencyto
+	depends = r-plyr
+	depends = r-rbgl
+	depends = r-rcpp
+	depends = r-rcpparmadillo
+	depends = r-rcppparallel
+	depends = r-rgraphviz
+	depends = r-rhdf5lib
+	depends = r-rprotobuflib
+	depends = r-runit
+	depends = r-tibble
+	depends = r-xml
+	depends = r-xml2
+	depends = r-yaml
+	depends = gcc
+	depends = make
+	depends = libxml2
+	optdepends = r-flowworkspacedata
+	optdepends = r-knitr
+	optdepends = r-parallel
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/CytoML_2.8.0.tar.gz
+	sha256sums = 399f4daacc8b69adc47f9a804041af443d28b5f2ea5f094d2aa805e87653e76e
+
+pkgname = r-cytoml
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5555fff9937b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,64 @@
+# system requirements: xml2, GNU make, C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=CytoML
+_pkgver=2.8.0
+pkgname=r-${_pkgname,,}
+pkgver=2.8.0
+pkgrel=1
+pkgdesc='A GatingML Interface for Cross Platform Cytometry Data Sharing'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('custom')
+depends=(
+  r
+  r-base64enc
+  r-bh
+  r-biobase
+  r-corpcor
+  r-cytolib
+  r-data.table
+  r-dplyr
+  r-flowcore
+  r-flowworkspace
+  r-ggcyto
+  r-graph
+  r-jsonlite
+  r-opencyto
+  r-plyr
+  r-rbgl
+  r-rcpp
+  r-rcpparmadillo
+  r-rcppparallel
+  r-rgraphviz
+  r-rhdf5lib
+  r-rprotobuflib
+  r-runit
+  r-tibble
+  r-xml
+  r-xml2
+  r-yaml
+  gcc
+  make
+  libxml2
+)
+optdepends=(
+  r-flowworkspacedata
+  r-knitr
+  r-parallel
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('399f4daacc8b69adc47f9a804041af443d28b5f2ea5f094d2aa805e87653e76e')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: