add r-damirseq

2 files changed, 96 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3ca1f0d6f95e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,40 @@
+pkgbase = r-damirseq
+	pkgdesc = Data Mining for RNA-seq data: normalization, feature selection and classification
+	pkgver = 2.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/DaMiRseq
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-arm
+	depends = r-caret
+	depends = r-corrplot
+	depends = r-deseq2
+	depends = r-e1071
+	depends = r-edaseq
+	depends = r-edger
+	depends = r-factominer
+	depends = r-fselector
+	depends = r-ggplot2
+	depends = r-hmisc
+	depends = r-ineq
+	depends = r-kknn
+	depends = r-limma
+	depends = r-lubridate
+	depends = r-pheatmap
+	depends = r-pls
+	depends = r-plsvarsel
+	depends = r-plyr
+	depends = r-randomforest
+	depends = r-rcolorbrewer
+	depends = r-reshape2
+	depends = r-rsnns
+	depends = r-summarizedexperiment
+	depends = r-sva
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/DaMiRseq_2.8.0.tar.gz
+	sha256sums = 2fa0c4cbc03a3ee01c8d0b75d203722f2b6d242f2c1353395f08ae835844d2d3
+
+pkgname = r-damirseq
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..38be4b621b80
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,56 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=DaMiRseq
+_pkgver=2.8.0
+pkgname=r-${_pkgname,,}
+pkgver=2.8.0
+pkgrel=1
+pkgdesc='Data Mining for RNA-seq data: normalization, feature selection and classification'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-arm
+  r-caret
+  r-corrplot
+  r-deseq2
+  r-e1071
+  r-edaseq
+  r-edger
+  r-factominer
+  r-fselector
+  r-ggplot2
+  r-hmisc
+  r-ineq
+  r-kknn
+  r-limma
+  r-lubridate
+  r-pheatmap
+  r-pls
+  r-plsvarsel
+  r-plyr
+  r-randomforest
+  r-rcolorbrewer
+  r-reshape2
+  r-rsnns
+  r-summarizedexperiment
+  r-sva
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('2fa0c4cbc03a3ee01c8d0b75d203722f2b6d242f2c1353395f08ae835844d2d3')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: