add r-dearseq

2 files changed, 92 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..e39921b3a4f7
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,38 @@
+pkgbase = r-dearseq
+	pkgdesc = Differential Expression Analysis for RNA-seq data through a robust variance component test
+	pkgver = 1.8.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/dearseq
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-ggplot2
+	depends = r-matrixstats
+	depends = r-patchwork
+	depends = r-pbapply
+	depends = r-statmod
+	depends = r-survey
+	depends = r-viridislite
+	depends = r-compquadform
+	depends = r-reshape2
+	depends = r-plyr
+	depends = r-dplyr
+	optdepends = r-biobase
+	optdepends = r-biocmanager
+	optdepends = r-biocset
+	optdepends = r-covr
+	optdepends = r-deseq2
+	optdepends = r-edger
+	optdepends = r-geoquery
+	optdepends = r-gsa
+	optdepends = r-knitr
+	optdepends = r-limma
+	optdepends = r-readxl
+	optdepends = r-rmarkdown
+	optdepends = r-s4vectors
+	optdepends = r-summarizedexperiment
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/dearseq_1.8.1.tar.gz
+	sha256sums = 415e466e09d170fb67e87ca0c8e66a21cd1dabc83a2e4dadae8c32fdca2424b8
+
+pkgname = r-dearseq
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..3957eb5a466a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=dearseq
+_pkgver=1.8.1
+pkgname=r-${_pkgname,,}
+pkgver=1.8.1
+pkgrel=1
+pkgdesc='Differential Expression Analysis for RNA-seq data through a robust variance component test'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-ggplot2
+  r-matrixstats
+  r-patchwork
+  r-pbapply
+  r-statmod
+  r-survey
+  r-viridislite
+  r-compquadform
+  r-reshape2
+  r-plyr
+  r-dplyr
+)
+optdepends=(
+  r-biobase
+  r-biocmanager
+  r-biocset
+  r-covr
+  r-deseq2
+  r-edger
+  r-geoquery
+  r-gsa
+  r-knitr
+  r-limma
+  r-readxl
+  r-rmarkdown
+  r-s4vectors
+  r-summarizedexperiment
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('415e466e09d170fb67e87ca0c8e66a21cd1dabc83a2e4dadae8c32fdca2424b8')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: