add r-demixt

2 files changed, 56 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..bac6811f28a0
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = r-demixt
+	pkgdesc = Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
+	pkgver = 1.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/DeMixT
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-base64enc
+	depends = r-ggplot2
+	depends = r-knitr
+	depends = r-matrixcalc
+	depends = r-matrixstats
+	depends = r-rcpp
+	depends = r-rmarkdown
+	depends = r-summarizedexperiment
+	depends = r-truncdist
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/DeMixT_1.12.0.tar.gz
+	sha256sums = ce42e26ce92ffd15299325b9b72ef14d368544110b05310aa20540ab9bd1a687
+
+pkgname = r-demixt
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9b91ad7aac70
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,35 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=DeMixT
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=1
+pkgdesc='Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-base64enc
+  r-ggplot2
+  r-knitr
+  r-matrixcalc
+  r-matrixstats
+  r-rcpp
+  r-rmarkdown
+  r-summarizedexperiment
+  r-truncdist
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('ce42e26ce92ffd15299325b9b72ef14d368544110b05310aa20540ab9bd1a687')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: