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| author | cev | 2019-02-15 14:12:47 -0500 |
|---|---|---|
| committer | cev | 2019-02-15 14:12:47 -0500 |
| commit | 2ae84c6bc492fdda7b81b732494b8cd132aafe36 (patch) | |
| tree | a65ec6c2848151f8bf6f21fa1d87429662468de8 | |
| download | aur-2ae84c6bc492fdda7b81b732494b8cd132aafe36.tar.gz | |
Initial commit
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | PKGBUILD | 20 |
2 files changed, 37 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..b802c8bd7a52 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +pkgbase = r-deseq2 + pkgdesc = Differential gene expression analysis based on the negative binomial distribution. + pkgver = 1.22.2 + pkgrel = 1 + url = https://bioconductor.org/packages/release/bioc/html/DESeq2.html + arch = x86_64 + license = LGPL3 + depends = r + depends = r-s4vectors + depends = r-iranges + depends = r-genomicranges + depends = r-summarizedexperiment + source = https://bioconductor.org/packages/release/bioc/src/contrib/DESeq2_1.22.2.tar.gz + sha1sums = 03cfc4d91daab8207ff84a798bf9e4b7f1f172cf + +pkgname = r-deseq2 + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..fc81d2c14fad --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,20 @@ +# Maintainer: Charles Vejnar + +pkgname=r-deseq2 +_bc_name=DESeq2 +pkgver=1.22.2 +pkgrel=1 +pkgdesc="Differential gene expression analysis based on the negative binomial distribution." +url="https://bioconductor.org/packages/release/bioc/html/DESeq2.html" +arch=("x86_64") +license=("LGPL3") +depends=("r" "r-s4vectors" "r-iranges" "r-genomicranges" "r-summarizedexperiment") +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bc_name}_${pkgver}.tar.gz") +sha1sums=("03cfc4d91daab8207ff84a798bf9e4b7f1f172cf") + +package() { + mkdir -p $pkgdir/usr/lib/R/library + cd $srcdir + + R CMD INSTALL -l $pkgdir/usr/lib/R/library ./${_bc_name} +} |