add r-desingle

2 files changed, 58 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..00b84850583c
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = r-desingle
+	pkgdesc = DEsingle for detecting three types of differential expression in single-cell RNA-seq data
+	pkgver = 1.16.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/DEsingle
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-bbmle
+	depends = r-biocparallel
+	depends = r-gamlss
+	depends = r-maxlik
+	depends = r-pscl
+	depends = r-vgam
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-singlecellexperiment
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/DEsingle_1.16.0.tar.gz
+	sha256sums = f3838ccc43eba65df7b638fc1a3b34e0edeaf67ebab0db6eb0568290f0fa823f
+
+pkgname = r-desingle
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..603b2d30643a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,37 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=DEsingle
+_pkgver=1.16.0
+pkgname=r-${_pkgname,,}
+pkgver=1.16.0
+pkgrel=1
+pkgdesc='DEsingle for detecting three types of differential expression in single-cell RNA-seq data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-bbmle
+  r-biocparallel
+  r-gamlss
+  r-maxlik
+  r-pscl
+  r-vgam
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-singlecellexperiment
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f3838ccc43eba65df7b638fc1a3b34e0edeaf67ebab0db6eb0568290f0fa823f')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: