add r-dexseq

2 files changed, 88 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f0f44de29702
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,36 @@
+pkgbase = r-dexseq
+	pkgdesc = Inference of differential exon usage in RNA-Seq
+	pkgver = 1.42.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/DEXSeq
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-annotationdbi
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biomart
+	depends = r-deseq2
+	depends = r-genefilter
+	depends = r-geneplotter
+	depends = r-genomicranges
+	depends = r-hwriter
+	depends = r-iranges
+	depends = r-rcolorbrewer
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-statmod
+	depends = r-stringr
+	depends = r-summarizedexperiment
+	optdepends = r-biocstyle
+	optdepends = r-genomicfeatures
+	optdepends = r-knitr
+	optdepends = r-parathyroidse
+	optdepends = r-pasilla
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/DEXSeq_1.42.0.tar.gz
+	sha256sums = 550910c28638c78d74ea57ef8af01ef7d76ba91b36668432cf6c5f54774dfdb7
+
+pkgname = r-dexseq
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0901dbb2d214
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=DEXSeq
+_pkgver=1.42.0
+pkgname=r-${_pkgname,,}
+pkgver=1.42.0
+pkgrel=1
+pkgdesc='Inference of differential exon usage in RNA-Seq'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-biobase
+  r-biocgenerics
+  r-biocparallel
+  r-biomart
+  r-deseq2
+  r-genefilter
+  r-geneplotter
+  r-genomicranges
+  r-hwriter
+  r-iranges
+  r-rcolorbrewer
+  r-rsamtools
+  r-s4vectors
+  r-statmod
+  r-stringr
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocstyle
+  r-genomicfeatures
+  r-knitr
+  r-parathyroidse
+  r-pasilla
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('550910c28638c78d74ea57ef8af01ef7d76ba91b36668432cf6c5f54774dfdb7')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: