add r-diffbind

2 files changed, 111 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..4391b4fa4fae
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,47 @@
+pkgbase = r-diffbind
+	pkgdesc = Differential Binding Analysis of ChIP-Seq Peak Data
+	pkgver = 3.6.1
+	pkgrel = 3
+	url = https://bioconductor.org/packages/DiffBind
+	arch = x86_64
+	license = Artistic2.0
+	depends = r
+	depends = r-amap
+	depends = r-apeglm
+	depends = r-ashr
+	depends = r-biocparallel
+	depends = r-deseq2
+	depends = r-dplyr
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-ggrepel
+	depends = r-gplots
+	depends = r-greylistchip
+	depends = r-iranges
+	depends = r-limma
+	depends = r-locfit
+	depends = r-rcolorbrewer
+	depends = r-rcpp
+	depends = r-rhtslib
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-systempiper
+	depends = make
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome
+	optdepends = r-csaw
+	optdepends = r-edger
+	optdepends = r-genomeinfodb
+	optdepends = r-grid
+	optdepends = r-profileplyr
+	optdepends = r-rgl
+	optdepends = r-rtracklayer
+	optdepends = r-testthat
+	optdepends = r-xlconnect
+	optdepends = r-xtable
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/DiffBind_3.6.1.tar.gz
+	sha256sums = f95f82e80399fac3c1a9d980ddde4fca655544fe0f76b9806c84aa5a379af447
+
+pkgname = r-diffbind
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1b76d6abd574
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,64 @@
+# system requirements: GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=DiffBind
+_pkgver=3.6.1
+pkgname=r-${_pkgname,,}
+pkgver=3.6.1
+pkgrel=3
+pkgdesc='Differential Binding Analysis of ChIP-Seq Peak Data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-amap
+  r-apeglm
+  r-ashr
+  r-biocparallel
+  r-deseq2
+  r-dplyr
+  r-genomicalignments
+  r-genomicranges
+  r-ggplot2
+  r-ggrepel
+  r-gplots
+  r-greylistchip
+  r-iranges
+  r-limma
+  r-locfit
+  r-rcolorbrewer
+  r-rcpp
+  r-rhtslib
+  r-rsamtools
+  r-s4vectors
+  r-summarizedexperiment
+  r-systempiper
+  make
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome
+  r-csaw
+  r-edger
+  r-genomeinfodb
+  r-grid
+  r-profileplyr
+  r-rgl
+  r-rtracklayer
+  r-testthat
+  r-xlconnect
+  r-xtable
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f95f82e80399fac3c1a9d980ddde4fca655544fe0f76b9806c84aa5a379af447')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: