add r-diffcyt

2 files changed, 81 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..7f274248acb7
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,32 @@
+pkgbase = r-diffcyt
+	pkgdesc = Differential discovery in high-dimensional cytometry via high-resolution clustering
+	pkgver = 1.16.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/diffcyt
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-circlize
+	depends = r-complexheatmap
+	depends = r-dplyr
+	depends = r-edger
+	depends = r-flowcore
+	depends = r-flowsom
+	depends = r-limma
+	depends = r-lme4
+	depends = r-magrittr
+	depends = r-multcomp
+	depends = r-reshape2
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-tidyr
+	optdepends = r-biocstyle
+	optdepends = r-catalyst
+	optdepends = r-hdcytodata
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/diffcyt_1.16.0.tar.gz
+	sha256sums = abe58173f953fd273e93dbc851e0735357fce9f4c4aa1e2a3d8f88573ff5da57
+
+pkgname = r-diffcyt
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..6110a4adf000
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=diffcyt
+_pkgver=1.16.0
+pkgname=r-${_pkgname,,}
+pkgver=1.16.0
+pkgrel=1
+pkgdesc='Differential discovery in high-dimensional cytometry via high-resolution clustering'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-circlize
+  r-complexheatmap
+  r-dplyr
+  r-edger
+  r-flowcore
+  r-flowsom
+  r-limma
+  r-lme4
+  r-magrittr
+  r-multcomp
+  r-reshape2
+  r-s4vectors
+  r-summarizedexperiment
+  r-tidyr
+)
+optdepends=(
+  r-biocstyle
+  r-catalyst
+  r-hdcytodata
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('abe58173f953fd273e93dbc851e0735357fce9f4c4aa1e2a3d8f88573ff5da57')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: