add r-diffhic

2 files changed, 89 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3571e921931d
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,36 @@
+pkgbase = r-diffhic
+	pkgdesc = Differential Analyis of Hi-C Data
+	pkgver = 1.28.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/diffHic
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-csaw
+	depends = r-edger
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-interactionset
+	depends = r-iranges
+	depends = r-limma
+	depends = r-locfit
+	depends = r-rcpp
+	depends = r-rhdf5
+	depends = r-rhtslib
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-zlibbioc
+	depends = gcc
+	depends = make
+	optdepends = r-bsgenome.ecoli.ncbi.20080805
+	optdepends = r-matrix
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/diffHic_1.28.0.tar.gz
+	sha256sums = 5a964d0bbd8ff9019ae3d2ba4192e7ecf58346b5b2a064135cb3eb67433243be
+
+pkgname = r-diffhic
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0ef75a7a4f5b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# system requirements: C++11, GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=diffHic
+_pkgver=1.28.0
+pkgname=r-${_pkgname,,}
+pkgver=1.28.0
+pkgrel=1
+pkgdesc='Differential Analyis of Hi-C Data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-biostrings
+  r-bsgenome
+  r-csaw
+  r-edger
+  r-genomeinfodb
+  r-genomicranges
+  r-interactionset
+  r-iranges
+  r-limma
+  r-locfit
+  r-rcpp
+  r-rhdf5
+  r-rhtslib
+  r-rsamtools
+  r-rtracklayer
+  r-s4vectors
+  r-summarizedexperiment
+  r-zlibbioc
+  gcc
+  make
+)
+optdepends=(
+  r-bsgenome.ecoli.ncbi.20080805
+  r-matrix
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('5a964d0bbd8ff9019ae3d2ba4192e7ecf58346b5b2a064135cb3eb67433243be')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: