add r-dmrcaller

2 files changed, 58 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..a99ca6d3eada
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = r-dmrcaller
+	pkgdesc = Differentially Methylated Regions caller
+	pkgver = 1.28.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/DMRcaller
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-betareg
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rcpp
+	depends = r-rcpproll
+	depends = r-s4vectors
+	optdepends = r-biocgenerics
+	optdepends = r-knitr
+	optdepends = r-runit
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/DMRcaller_1.28.0.tar.gz
+	sha256sums = 362b23674874b7d9b5dcc18ded37731386e4949594da63d337baca2de8e02d8b
+
+pkgname = r-dmrcaller
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..ab98454b4f0f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,37 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=DMRcaller
+_pkgver=1.28.0
+pkgname=r-${_pkgname,,}
+pkgver=1.28.0
+pkgrel=1
+pkgdesc='Differentially Methylated Regions caller'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-betareg
+  r-genomicranges
+  r-iranges
+  r-rcpp
+  r-rcpproll
+  r-s4vectors
+)
+optdepends=(
+  r-biocgenerics
+  r-knitr
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('362b23674874b7d9b5dcc18ded37731386e4949594da63d337baca2de8e02d8b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: