add r-dose

2 files changed, 68 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..b2088461ff7e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,26 @@
+pkgbase = r-dose
+	pkgdesc = Disease Ontology Semantic and Enrichment analysis
+	pkgver = 3.22.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/DOSE
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-annotationdbi
+	depends = r-biocparallel
+	depends = r-do.db
+	depends = r-fgsea
+	depends = r-ggplot2
+	depends = r-gosemsim
+	depends = r-qvalue
+	depends = r-reshape2
+	optdepends = r-clusterprofiler
+	optdepends = r-knitr
+	optdepends = r-org.hs.eg.db
+	optdepends = r-prettydoc
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/DOSE_3.22.0.tar.gz
+	sha256sums = 97372511adc7b87f16237a61f6e03c232acc73e22dfcf1b8b8a4c40528268f86
+
+pkgname = r-dose
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..070b16c92522
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,42 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=DOSE
+_pkgver=3.22.0
+pkgname=r-${_pkgname,,}
+pkgver=3.22.0
+pkgrel=1
+pkgdesc='Disease Ontology Semantic and Enrichment analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationdbi
+  r-biocparallel
+  r-do.db
+  r-fgsea
+  r-ggplot2
+  r-gosemsim
+  r-qvalue
+  r-reshape2
+)
+optdepends=(
+  r-clusterprofiler
+  r-knitr
+  r-org.hs.eg.db
+  r-prettydoc
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('97372511adc7b87f16237a61f6e03c232acc73e22dfcf1b8b8a4c40528268f86')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: