Version 1.0.0

2 files changed, 131 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..b7baf2bcfddc
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,53 @@
+pkgbase = r-dreamlet
+	pkgdesc = Cohort-scale differential expression analysis of single cell data using linear (mixed) models
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/dreamlet
+	arch = x86_64
+	license = Artistic2.0
+	checkdepends = r-muscat
+	checkdepends = r-runit
+	makedepends = r-beachmat
+	depends = r-ashr
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-data.table
+	depends = r-delayedarray
+	depends = r-delayedmatrixstats
+	depends = r-dplyr
+	depends = r-edger
+	depends = r-ggplot2
+	depends = r-ggrepel
+	depends = r-gseabase
+	depends = r-gtools
+	depends = r-iranges
+	depends = r-limma
+	depends = r-lme4
+	depends = r-mashr
+	depends = r-matrixgenerics
+	depends = r-purrr
+	depends = r-rcpp
+	depends = r-rdpack
+	depends = r-reshape2
+	depends = r-s4vectors
+	depends = r-scattermore
+	depends = r-singlecellexperiment
+	depends = r-sparsematrixstats
+	depends = r-summarizedexperiment
+	depends = r-tidyr
+	depends = r-variancepartition
+	depends = r-zenith
+	optdepends = r-biocstyle
+	optdepends = r-experimenthub
+	optdepends = r-knitr
+	optdepends = r-muscat
+	optdepends = r-pander
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	optdepends = r-scater
+	optdepends = r-scuttle
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/dreamlet_1.0.0.tar.gz
+	md5sums = 34ea1ec9e44c635699ed9cf8deed29cd
+	sha256sums = eefbfcf96915cdfc80f5a5b9eca92a6dd391d768eaa26feb1ef7cd873007ab0c
+
+pkgname = r-dreamlet
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..db5532e2911c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,78 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=dreamlet
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Cohort-scale differential expression analysis of single cell data using linear (mixed) models"
+arch=(x86_64)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(Artistic2.0)
+depends=(
+  r-ashr
+  r-biocgenerics
+  r-biocparallel
+  r-data.table
+  r-delayedarray
+  r-delayedmatrixstats
+  r-dplyr
+  r-edger
+  r-ggplot2
+  r-ggrepel
+  r-gseabase
+  r-gtools
+  r-iranges
+  r-limma
+  r-lme4
+  r-mashr
+  r-matrixgenerics
+  r-purrr
+  r-rcpp
+  r-rdpack
+  r-reshape2
+  r-s4vectors
+  r-scattermore
+  r-singlecellexperiment
+  r-sparsematrixstats
+  r-summarizedexperiment
+  r-tidyr
+  r-variancepartition
+  r-zenith
+)
+makedepends=(
+  r-beachmat
+)
+checkdepends=(
+  r-muscat
+  r-runit
+)
+optdepends=(
+  r-biocstyle
+  r-experimenthub
+  r-knitr
+  r-muscat
+  r-pander
+  r-rmarkdown
+  r-runit
+  r-scater
+  r-scuttle
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('34ea1ec9e44c635699ed9cf8deed29cd')
+sha256sums=('eefbfcf96915cdfc80f5a5b9eca92a6dd391d768eaa26feb1ef7cd873007ab0c')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}