add r-dss

2 files changed, 54 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..4d73f701a453
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,19 @@
+pkgbase = r-dss
+	pkgdesc = Dispersion shrinkage for sequencing data
+	pkgver = 2.44.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/DSS
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biobase
+	depends = r-biocparallel
+	depends = r-bsseq
+	depends = r-delayedarray
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/DSS_2.44.0.tar.gz
+	sha256sums = 561a87d9ca20c7607a2c6816ead719d16da4c0f19dd94d9e69543499e058858a
+
+pkgname = r-dss
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..ae71da94362a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,35 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=DSS
+_pkgver=2.44.0
+pkgname=r-${_pkgname,,}
+pkgver=2.44.0
+pkgrel=1
+pkgdesc='Dispersion shrinkage for sequencing data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-biocparallel
+  r-bsseq
+  r-delayedarray
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('561a87d9ca20c7607a2c6816ead719d16da4c0f19dd94d9e69543499e058858a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: