add r-easyrnaseq

2 files changed, 92 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..03bb6825f82b
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,38 @@
+pkgbase = r-easyrnaseq
+	pkgdesc = Count summarization and normalization for RNA-Seq data
+	pkgver = 2.32.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/easyRNASeq
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biobase
+	depends = r-biocfilecache
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biomart
+	depends = r-biostrings
+	depends = r-edger
+	depends = r-genomeinfodb
+	depends = r-genomeintervals
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-locfit
+	depends = r-lsd
+	depends = r-rappdirs
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-shortread
+	depends = r-summarizedexperiment
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome
+	optdepends = r-bsgenome.dmelanogaster.ucsc.dm3
+	optdepends = r-curl
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/easyRNASeq_2.32.0.tar.gz
+	sha256sums = f9c6b27ccbae0bdb79785f899adc3181dfed416b8f155ce53c7c4b7c6cbec1b7
+
+pkgname = r-easyrnaseq
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..02222dfc64a4
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=easyRNASeq
+_pkgver=2.32.0
+pkgname=r-${_pkgname,,}
+pkgver=2.32.0
+pkgrel=1
+pkgdesc='Count summarization and normalization for RNA-Seq data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biobase
+  r-biocfilecache
+  r-biocgenerics
+  r-biocparallel
+  r-biomart
+  r-biostrings
+  r-edger
+  r-genomeinfodb
+  r-genomeintervals
+  r-genomicalignments
+  r-genomicranges
+  r-iranges
+  r-locfit
+  r-lsd
+  r-rappdirs
+  r-rsamtools
+  r-s4vectors
+  r-shortread
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome
+  r-bsgenome.dmelanogaster.ucsc.dm3
+  r-curl
+  r-knitr
+  r-rmarkdown
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f9c6b27ccbae0bdb79785f899adc3181dfed416b8f155ce53c7c4b7c6cbec1b7')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: