add r-edaseq

2 files changed, 82 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..e189942e438a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,33 @@
+pkgbase = r-edaseq
+	pkgdesc = Exploratory Data Analysis and Normalization for RNA-Seq
+	pkgver = 2.30.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/EDASeq
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-annotationdbi
+	depends = r-aroma.light
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocmanager
+	depends = r-biomart
+	depends = r-biostrings
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rsamtools
+	depends = r-shortread
+	optdepends = r-biocstyle
+	optdepends = r-deseq2
+	optdepends = r-edger
+	optdepends = r-kernsmooth
+	optdepends = r-knitr
+	optdepends = r-leebamviews
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-yeastrnaseq
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/EDASeq_2.30.0.tar.gz
+	sha256sums = 9a1fd96f0c01c0afc524a851d5a955ac0b939a1ad79b08e35155e3dd615dd7e2
+
+pkgname = r-edaseq
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..27a4b2109dcd
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=EDASeq
+_pkgver=2.30.0
+pkgname=r-${_pkgname,,}
+pkgver=2.30.0
+pkgrel=1
+pkgdesc='Exploratory Data Analysis and Normalization for RNA-Seq'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationdbi
+  r-aroma.light
+  r-biobase
+  r-biocgenerics
+  r-biocmanager
+  r-biomart
+  r-biostrings
+  r-genomicfeatures
+  r-genomicranges
+  r-iranges
+  r-rsamtools
+  r-shortread
+)
+optdepends=(
+  r-biocstyle
+  r-deseq2
+  r-edger
+  r-kernsmooth
+  r-knitr
+  r-leebamviews
+  r-rmarkdown
+  r-testthat
+  r-yeastrnaseq
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('9a1fd96f0c01c0afc524a851d5a955ac0b939a1ad79b08e35155e3dd615dd7e2')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: