add r-edger

2 files changed, 65 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..7cf52d1e5477
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,24 @@
+pkgbase = r-edger
+	pkgdesc = Empirical Analysis of Digital Gene Expression Data in R
+	pkgver = 3.38.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/edgeR
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-limma
+	depends = r-locfit
+	depends = r-rcpp
+	depends = gcc
+	optdepends = r-annotationdbi
+	optdepends = r-biobase
+	optdepends = r-jsonlite
+	optdepends = r-org.hs.eg.db
+	optdepends = r-readr
+	optdepends = r-rhdf5
+	optdepends = r-splines
+	optdepends = r-summarizedexperiment
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/edgeR_3.38.1.tar.gz
+	sha256sums = 3356f4f1349267091db058367f2f74faf78b5a7b42dfc7c1f0af94604e1d23e1
+
+pkgname = r-edger
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0f279ccc83d3
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,41 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=edgeR
+_pkgver=3.38.1
+pkgname=r-${_pkgname,,}
+pkgver=3.38.1
+pkgrel=1
+pkgdesc='Empirical Analysis of Digital Gene Expression Data in R'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-limma
+  r-locfit
+  r-rcpp
+  gcc
+)
+optdepends=(
+  r-annotationdbi
+  r-biobase
+  r-jsonlite
+  r-org.hs.eg.db
+  r-readr
+  r-rhdf5
+  r-splines
+  r-summarizedexperiment
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('3356f4f1349267091db058367f2f74faf78b5a7b42dfc7c1f0af94604e1d23e1')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: