add r-elmer

2 files changed, 134 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..abda1b8f9ed8
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,59 @@
+pkgbase = r-elmer
+	pkgdesc = Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
+	pkgver = 2.20.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/ELMER
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biomart
+	depends = r-circlize
+	depends = r-complexheatmap
+	depends = r-delayedarray
+	depends = r-doparallel
+	depends = r-downloader
+	depends = r-dplyr
+	depends = r-elmer.data
+	depends = r-genomeinfodb
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-ggpubr
+	depends = r-ggrepel
+	depends = r-gridextra
+	depends = r-gviz
+	depends = r-iranges
+	depends = r-magrittr
+	depends = r-multiassayexperiment
+	depends = r-plotly
+	depends = r-plyr
+	depends = r-progress
+	depends = r-purrr
+	depends = r-readr
+	depends = r-reshape
+	depends = r-reshape2
+	depends = r-rmarkdown
+	depends = r-rtracklayer
+	depends = r-rvest
+	depends = r-s4vectors
+	depends = r-scales
+	depends = r-stringr
+	depends = r-summarizedexperiment
+	depends = r-tcgabiolinks
+	depends = r-tibble
+	depends = r-tidyr
+	depends = r-xml2
+	optdepends = r-biocstyle
+	optdepends = r-covr
+	optdepends = r-data.table
+	optdepends = r-dt
+	optdepends = r-genomicinteractions
+	optdepends = r-knitr
+	optdepends = r-r.utils
+	optdepends = r-sesamedata
+	optdepends = r-testthat
+	optdepends = r-webshot
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ELMER_2.20.0.tar.gz
+	sha256sums = 978bd826c5655c34d8792eff115aca927ebb3179c0899098b33dd65353e5cefd
+
+pkgname = r-elmer
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..052be29fe1e8
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,75 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ELMER
+_pkgver=2.20.0
+pkgname=r-${_pkgname,,}
+pkgver=2.20.0
+pkgrel=1
+pkgdesc='Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biomart
+  r-circlize
+  r-complexheatmap
+  r-delayedarray
+  r-doparallel
+  r-downloader
+  r-dplyr
+  r-elmer.data
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-ggplot2
+  r-ggpubr
+  r-ggrepel
+  r-gridextra
+  r-gviz
+  r-iranges
+  r-magrittr
+  r-multiassayexperiment
+  r-plotly
+  r-plyr
+  r-progress
+  r-purrr
+  r-readr
+  r-reshape
+  r-reshape2
+  r-rmarkdown
+  r-rtracklayer
+  r-rvest
+  r-s4vectors
+  r-scales
+  r-stringr
+  r-summarizedexperiment
+  r-tcgabiolinks
+  r-tibble
+  r-tidyr
+  r-xml2
+)
+optdepends=(
+  r-biocstyle
+  r-covr
+  r-data.table
+  r-dt
+  r-genomicinteractions
+  r-knitr
+  r-r.utils
+  r-sesamedata
+  r-testthat
+  r-webshot
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('978bd826c5655c34d8792eff115aca927ebb3179c0899098b33dd65353e5cefd')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: