add r-enhancerhomologsearch

2 files changed, 92 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..0025f85bf9f4
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,38 @@
+pkgbase = r-enhancerhomologsearch
+	pkgdesc = Identification of putative mammalian orthologs to given enhancer
+	pkgver = 1.2.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/enhancerHomologSearch
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocfilecache
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-httr
+	depends = r-iranges
+	depends = r-jsonlite
+	depends = r-motifmatchr
+	depends = r-rcpp
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	optdepends = r-bsgenome.drerio.ucsc.danrer10
+	optdepends = r-bsgenome.hsapiens.ucsc.hg38
+	optdepends = r-bsgenome.mmusculus.ucsc.mm10
+	optdepends = r-knitr
+	optdepends = r-motifdb
+	optdepends = r-org.hs.eg.db
+	optdepends = r-org.mm.eg.db
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-tfbstools
+	optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene
+	optdepends = r-txdb.mmusculus.ucsc.mm10.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/enhancerHomologSearch_1.2.0.tar.gz
+	sha256sums = b7b750fb2d68cab41fdff4491bb1a7e71273bbf4cb1de738f3d80591d4679e1b
+
+pkgname = r-enhancerhomologsearch
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5b236ca1e196
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=enhancerHomologSearch
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=1.2.0
+pkgrel=1
+pkgdesc='Identification of putative mammalian orthologs to given enhancer'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocfilecache
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-bsgenome
+  r-genomeinfodb
+  r-genomicranges
+  r-httr
+  r-iranges
+  r-jsonlite
+  r-motifmatchr
+  r-rcpp
+  r-rtracklayer
+  r-s4vectors
+)
+optdepends=(
+  r-bsgenome.drerio.ucsc.danrer10
+  r-bsgenome.hsapiens.ucsc.hg38
+  r-bsgenome.mmusculus.ucsc.mm10
+  r-knitr
+  r-motifdb
+  r-org.hs.eg.db
+  r-org.mm.eg.db
+  r-rmarkdown
+  r-testthat
+  r-tfbstools
+  r-txdb.hsapiens.ucsc.hg38.knowngene
+  r-txdb.mmusculus.ucsc.mm10.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('b7b750fb2d68cab41fdff4491bb1a7e71273bbf4cb1de738f3d80591d4679e1b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: