add r-enmcb

2 files changed, 80 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..c3c7699a7226
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,32 @@
+pkgbase = r-enmcb
+	pkgdesc = Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models
+	pkgver = 1.8.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/EnMCB
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-doparallel
+	depends = r-foreach
+	depends = r-ggplot2
+	depends = r-glmnet
+	depends = r-illuminahumanmethylation450kanno.ilmn12.hg19
+	depends = r-mboost
+	depends = r-minfi
+	depends = r-rms
+	depends = r-survivalroc
+	depends = r-survivalsvm
+	depends = r-igraph
+	optdepends = r-affycoretools
+	optdepends = r-biobase
+	optdepends = r-knitr
+	optdepends = r-plotroc
+	optdepends = r-prognosticroc
+	optdepends = r-rmarkdown
+	optdepends = r-summarizedexperiment
+	optdepends = r-survminer
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/EnMCB_1.8.1.tar.gz
+	sha256sums = 129e5a18c4051e618778b15b32a6ebe8105896ad1eca45c23ed534e2de220543
+
+pkgname = r-enmcb
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..75c77522d952
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=EnMCB
+_pkgver=1.8.1
+pkgname=r-${_pkgname,,}
+pkgver=1.8.1
+pkgrel=1
+pkgdesc='Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-doparallel
+  r-foreach
+  r-ggplot2
+  r-glmnet
+  r-illuminahumanmethylation450kanno.ilmn12.hg19
+  r-mboost
+  r-minfi
+  r-rms
+  r-survivalroc
+  r-survivalsvm
+  r-igraph
+)
+optdepends=(
+  r-affycoretools
+  r-biobase
+  r-knitr
+  r-plotroc
+  r-prognosticroc
+  r-rmarkdown
+  r-summarizedexperiment
+  r-survminer
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('129e5a18c4051e618778b15b32a6ebe8105896ad1eca45c23ed534e2de220543')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: