summarylogtreecommitdiffstats
diff options
context:
space:
mode:
authorBioArchLinuxBot2022-11-26 16:34:15 +0000
committerBioArchLinuxBot2022-11-26 16:34:15 +0000
commitd44d683a031778d8ce92cbccb096e61caf1eb624 (patch)
treeed5d661ef52fb60e9067a443ae83b7808dbf6ba3
parent3796ca55c86f498a5dacf3a94c8d758a9d2d68a1 (diff)
downloadaur-d44d683a031778d8ce92cbccb096e61caf1eb624.tar.gz
[lilac] updated to 1.8.2-6
-rw-r--r--.SRCINFO13
-rw-r--r--PKGBUILD13
2 files changed, 12 insertions, 14 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 21ac581d4628..6d5732ea69f2 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,27 +1,26 @@
pkgbase = r-enmcb
pkgdesc = Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models
pkgver = 1.8.2
- pkgrel = 4
+ pkgrel = 6
url = https://bioconductor.org/packages/3.15/EnMCB
arch = any
license = GPL
depends = r
- depends = r-doparallel
- depends = r-foreach
+ depends = r-biocfilecache
+ depends = r-e1071
depends = r-ggplot2
depends = r-glmnet
- depends = r-illuminahumanmethylation450kanno.ilmn12.hg19
+ depends = r-igraph
depends = r-mboost
- depends = r-minfi
depends = r-rms
depends = r-survivalroc
depends = r-survivalsvm
- depends = r-igraph
optdepends = r-affycoretools
optdepends = r-biobase
optdepends = r-knitr
+ optdepends = r-limma
+ optdepends = r-minfi
optdepends = r-plotroc
- optdepends = r-prognosticroc
optdepends = r-rmarkdown
optdepends = r-summarizedexperiment
optdepends = r-survminer
diff --git a/PKGBUILD b/PKGBUILD
index 71b900024c6b..190bd8851641 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -4,31 +4,30 @@ _pkgname=EnMCB
_pkgver=1.8.2
pkgname=r-${_pkgname,,}
pkgver=1.8.2
-pkgrel=4
+pkgrel=6
pkgdesc='Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models'
arch=('any')
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
- r-doparallel
- r-foreach
+ r-biocfilecache
+ r-e1071
r-ggplot2
r-glmnet
- r-illuminahumanmethylation450kanno.ilmn12.hg19
+ r-igraph
r-mboost
- r-minfi
r-rms
r-survivalroc
r-survivalsvm
- r-igraph
)
optdepends=(
r-affycoretools
r-biobase
r-knitr
+ r-limma
+ r-minfi
r-plotroc
- r-prognosticroc
r-rmarkdown
r-summarizedexperiment
r-survminer