add r-ensembldb

2 files changed, 96 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..5cf685da3229
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,40 @@
+pkgbase = r-ensembldb
+	pkgdesc = Utilities to create and use Ensembl-based annotation databases
+	pkgver = 2.20.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/ensembldb
+	arch = any
+	license = LGPL
+	depends = r
+	depends = r-annotationdbi
+	depends = r-annotationfilter
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-curl
+	depends = r-dbi
+	depends = r-genomeinfodb
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-protgenerics
+	depends = r-rsamtools
+	depends = r-rsqlite
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	optdepends = r-annotationhub
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.hsapiens.ncbi.grch38
+	optdepends = r-ensdb.hsapiens.v86
+	optdepends = r-ggbio
+	optdepends = r-gviz
+	optdepends = r-knitr
+	optdepends = r-magrittr
+	optdepends = r-rmariadb
+	optdepends = r-rmarkdown
+	optdepends = r-shiny
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ensembldb_2.20.1.tar.gz
+	sha256sums = 9fc77f065b629d3a4e9d11420f12d44ae15b12814c33337e4f76bb67c9d179a0
+
+pkgname = r-ensembldb
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2a02ce3d84c6
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,56 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ensembldb
+_pkgver=2.20.1
+pkgname=r-${_pkgname,,}
+pkgver=2.20.1
+pkgrel=1
+pkgdesc='Utilities to create and use Ensembl-based annotation databases'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-annotationdbi
+  r-annotationfilter
+  r-biobase
+  r-biocgenerics
+  r-biostrings
+  r-curl
+  r-dbi
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-iranges
+  r-protgenerics
+  r-rsamtools
+  r-rsqlite
+  r-rtracklayer
+  r-s4vectors
+)
+optdepends=(
+  r-annotationhub
+  r-biocstyle
+  r-bsgenome.hsapiens.ncbi.grch38
+  r-ensdb.hsapiens.v86
+  r-ggbio
+  r-gviz
+  r-knitr
+  r-magrittr
+  r-rmariadb
+  r-rmarkdown
+  r-shiny
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('9fc77f065b629d3a4e9d11420f12d44ae15b12814c33337e4f76bb67c9d179a0')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: