add r-epigenomix

2 files changed, 58 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..95b4f3fb4b66
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,22 @@
+pkgbase = r-epigenomix
+	pkgdesc = Epigenetic and gene transcription data normalization and integration with mixture models
+	pkgver = 1.36.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/epigenomix
+	arch = any
+	license = LGPL
+	depends = r
+	depends = r-beadarray
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-mcmcpack
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/epigenomix_1.36.0.tar.gz
+	sha256sums = b3ea975ed869a1e4ccd7235d35b52dd641c072b7328b9208a33e9b6456a4b995
+
+pkgname = r-epigenomix
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..29309fdcb23e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,36 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=epigenomix
+_pkgver=1.36.0
+pkgname=r-${_pkgname,,}
+pkgver=1.36.0
+pkgrel=1
+pkgdesc='Epigenetic and gene transcription data normalization and integration with mixture models'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-beadarray
+  r-biobase
+  r-biocgenerics
+  r-genomeinfodb
+  r-genomicranges
+  r-iranges
+  r-mcmcpack
+  r-rsamtools
+  r-s4vectors
+  r-summarizedexperiment
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('b3ea975ed869a1e4ccd7235d35b52dd641c072b7328b9208a33e9b6456a4b995')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: