add r-epitxdb

2 files changed, 96 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..bcd320a722e6
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,40 @@
+pkgbase = r-epitxdb
+	pkgdesc = Storing and accessing epitranscriptomic information using the AnnotationDbi interface
+	pkgver = 1.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/EpiTxDb
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-annotationdbi
+	depends = r-biocfilecache
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-curl
+	depends = r-dbi
+	depends = r-genomeinfodb
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-httr
+	depends = r-iranges
+	depends = r-modstrings
+	depends = r-rsqlite
+	depends = r-s4vectors
+	depends = r-trnadbimport
+	depends = r-xml2
+	optdepends = r-annotationhub
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.hsapiens.ucsc.hg38
+	optdepends = r-bsgenome.scerevisiae.ucsc.saccer3
+	optdepends = r-ensembldb
+	optdepends = r-epitxdb.hs.hg38
+	optdepends = r-ggplot2
+	optdepends = r-httptest
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/EpiTxDb_1.8.0.tar.gz
+	sha256sums = ba5d8e8740888be2aede2b5457b23997c0d19776189edf8e80e1ca23031caa8b
+
+pkgname = r-epitxdb
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..b1492932f50a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,56 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=EpiTxDb
+_pkgver=1.8.0
+pkgname=r-${_pkgname,,}
+pkgver=1.8.0
+pkgrel=1
+pkgdesc='Storing and accessing epitranscriptomic information using the AnnotationDbi interface'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationdbi
+  r-biocfilecache
+  r-biocgenerics
+  r-biostrings
+  r-curl
+  r-dbi
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-httr
+  r-iranges
+  r-modstrings
+  r-rsqlite
+  r-s4vectors
+  r-trnadbimport
+  r-xml2
+)
+optdepends=(
+  r-annotationhub
+  r-biocstyle
+  r-bsgenome.hsapiens.ucsc.hg38
+  r-bsgenome.scerevisiae.ucsc.saccer3
+  r-ensembldb
+  r-epitxdb.hs.hg38
+  r-ggplot2
+  r-httptest
+  r-knitr
+  r-rmarkdown
+  r-testthat
+  r-txdb.hsapiens.ucsc.hg38.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('ba5d8e8740888be2aede2b5457b23997c0d19776189edf8e80e1ca23031caa8b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: