add r-epivizr

2 files changed, 76 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..7b330e9d346d
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,30 @@
+pkgbase = r-epivizr
+	pkgdesc = R Interface to epiviz web app
+	pkgver = 2.26.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/epivizr
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-bumphunter
+	depends = r-epivizrdata
+	depends = r-epivizrserver
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-s4vectors
+	optdepends = r-antiprofilesdata
+	optdepends = r-biobase
+	optdepends = r-biocstyle
+	optdepends = r-hgu133plus2.db
+	optdepends = r-knitr
+	optdepends = r-minfi
+	optdepends = r-mus.musculus
+	optdepends = r-rmarkdown
+	optdepends = r-roxygen2
+	optdepends = r-summarizedexperiment
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/epivizr_2.26.0.tar.gz
+	sha256sums = 1fde153a1643ad94586f37ac12c11fd6cfff9dd5ff07939d78df712c0ce8f0c3
+
+pkgname = r-epivizr
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..fac2ab1d3de7
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,46 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=epivizr
+_pkgver=2.26.0
+pkgname=r-${_pkgname,,}
+pkgver=2.26.0
+pkgrel=1
+pkgdesc='R Interface to epiviz web app'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-bumphunter
+  r-epivizrdata
+  r-epivizrserver
+  r-genomeinfodb
+  r-genomicranges
+  r-iranges
+  r-s4vectors
+)
+optdepends=(
+  r-antiprofilesdata
+  r-biobase
+  r-biocstyle
+  r-hgu133plus2.db
+  r-knitr
+  r-minfi
+  r-mus.musculus
+  r-rmarkdown
+  r-roxygen2
+  r-summarizedexperiment
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1fde153a1643ad94586f37ac12c11fd6cfff9dd5ff07939d78df712c0ce8f0c3')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: